PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016655m
Common NameCICLE_v10016655mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 217aa    MW: 23736.8 Da    PI: 6.597
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016655mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e++  C  ++  lC dC  + H+       H++ pl
  Ciclev10016655m  4 QCNGCEAAEAKVLCCADEAALCWDCDRKVHSAnmlakkHQRLPL 47
                     6******99*********************66888888988775 PP

2zf-B_box29.61.4e-095294137
         zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     s+++kC+ ++e    +fC +++ l+C++C +++H        H
  Ciclev10016655m 52 SQMPKCDICQETTGYFFCLEDRALFCRKCDVAIHTAntyvsgH 94
                     689********99*********************654455555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.523147IPR000315B-box-type zinc finger
CDDcd000211.69E-7347No hitNo description
SMARTSM003362.0E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0015299IPR000315B-box-type zinc finger
SMARTSM003361.5E-155299IPR000315B-box-type zinc finger
PfamPF006433.0E-75395IPR000315B-box-type zinc finger
CDDcd000213.54E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MRIQCNGCEA AEAKVLCCAD EAALCWDCDR KVHSANMLAK KHQRLPLSHS SSQMPKCDIC  60
QETTGYFFCL EDRALFCRKC DVAIHTANTY VSGHQRFLLT GVKVGLGATE PCVSTTTNKS  120
DSIENASETE SSQPISKRNA SIPTACEANG MLHGQIGRVE TVSAPATSKM PSVTGDTTTV  180
NNIPDWHLDD YLTPTDFSPN YVLMDNVSFS KWFSRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.52180.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448008.11e-164hypothetical protein CICLE_v10016655mg
SwissprotQ9SYM26e-66BBX22_ARATH; B-box zinc finger protein 22
TrEMBLV4TLB31e-164V4TLB3_9R
STRINGVIT_19s0014g00350.t015e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-67light-regulated zinc finger protein 1